Thursday, 13 February 2014

Resting state pipeline

RS pipeline will pre-process your rsfMRI data so that it can then be used for higher level analysis.

What are the advantages of using the RS pipeline?

The work done through the pipeline will be highly reproducible.

What steps the the RS pipeline currently include?

  1. Convert DICOM data to NIFTI *
  2. Read header for scanning parameters
  3. Slice-timing correction
  4. Motion correction *
  5. Subject space registration *
  6. Normalization to a template *
  7. Detrending
  8. High pass temporal filtering
  9. Regression of WM, GM and motion

http://nipy.org/nipype/

 

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