BROCCOLI

BROCCOLI is an open-source parallel processing software package for fMRI analysis. The goal is to highlight the advantages and limitations of parallel CPU and GPU-based processing. BROCCOLI is written in OpenCL (Open Computing Language).

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Motion correction

https://github.com/wanderine/BROCCOLI/blob/master/code/testing_scripts/motioncorrection_spm_randommotion.m

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Normalization, normalize

https://github.com/wanderine/BROCCOLI/blob/master/code/testing_scripts/nonparametric_registration_spm_normalize.m

Normalization, segment

https://github.com/wanderine/BROCCOLI/blob/master/code/testing_scripts/nonparametric_registration_spm_coregister_and_segment.m

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First level analysis, through a batch script (modified from http://www.fil.ion.ucl.ac.uk/spm/data/face_rep/face_rep_spm5_batch.m)

https://github.com/wanderine/BROCCOLI/blob/master/code/testing_scripts/spm_firstlevel_with_extra_coregistration.m

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For further details, see our github repository. Also please feel free to try out our software (see the beta testing folder) and comment on that as well.

https://github.com/wanderine/BROCCOLI/

I am testing it now on resting state data and the author of BROCCOLI

Anders Eklund is very helpfull!!